After the events of Project: Sunflower, Erin returns to Ponyville to study magic. Meanwhile, something is stirring on the newly-discovered world of Harmony.
It has been 30 years since Tirek was defeated. Now, after having traveled the world to regain his power, he is ready to conquer Equestria once and for all.
Nightmare Moon banished Celestia, only to be defeated by Ahuizotl. Ponykind were made the scapegoats to blame for her scourge. 1000 years they pray for a saviour to deliver them. Anypony will do. Enter the last hope, a pizza delivery dude.
Both Link and Epona race to fight evil once again, however once they make it to the thing that is behind all the monsters that roam Hyrule, they get a big surprise.