In 2185, during his campaign against the Collectors, Commander Shepard discovered a previously unknown species whose origins predated any other race in the modern galaxy. Following a daring rescue from their ancient sanctuary, the Equestrian Herd was brought back into the galaxy where, for the first time in eons, they must walk their own path.

Knowing full well the terrible threat that lingers on the edge of the galaxy, the leader of this newly freed race fights to secure her people’s future while attempting to prepare for the storm on the horizon.

This is her story.
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The long awaited Sequel to Mass Effect 2: The Equestrian Equation This is a reader directed story. Your choices will shape events.
If you favorite, also like! It's one little button click that makes all the difference.

Also, this series has its own TVTropes page now! (Special thanks to user CrowMagnon for setting it up).

Humanity has grown to control most of the Sol system, and looks to distant stars for further expansion options. When probes discover an uncannily-earthlike planet at a vast distance, the Solar Government takes on a project larger than any before it.

A colony ship, carrying over seven thousand people, the Eclipse is constructed. Thanks to its translight engine, it is capable of making the journey within two decades. The expedition is launched with high hopes, its crew made up of the best and brightest, setting out to prove that the vastness of space was no longer an insurmountable obstacle, that landing on distant worlds full of life was no longer just a pipe dream.

What happens when this colony ship's crew arrives at their destination would forever change humanity's outlook on the rest of the universe, as well as what could be deemed possible. Supernatural beings, energies unexplainable, and most importantly, sapient organisms all populate this mysterious, fertile world. In all of its extensive preparations, is the Eclipse versatile enough to tackle the task assigned to it? Or, more importantly, is its crew?

Featured on Equestria Daily 1/1/2013.

Pre-read by Stringtheory and Milo. Proofread by Erumpet and Demetrius. Thanks! Contains some hard and some soft sci-fi elements.

Many years ago, shortly before the birth of one Twilight Sparkle, Celestia, ruler of Equestria, found a small item in a forest. That item? An egg. Around the same time, in another place, Celestia, ruler of Draconica found something small in a forest. That thing? A pony.

Art(C)me
Ponies(C)hasbro
dragons(C) ?

Brought to you by Loyal2Luna, this new Downloadable Content for Mass Effect 2 brings the fight to Equestria.

Just about ready to embark on their mission to stop the Collectors from further abducting human colonies, Commander Shepard and the crew of the Normandy SR-2 are given a new priority, when the Illusive Man tasks them with investigating the mysterious disappearance of a Cerberus science team.

Soon, what begins as a simple search-and-rescue unveils a mystery millions of years in the making, and the Commander finds himself thrust into a situation he couldn't possibly have prepared himself for.

Join the Hero of the Citadel as he uncovers the secrets, combats the demons, and ultimately decides the fate of the impossible world known as "Equestria."

On one of her regular hunts for gemstones, Rarity discovers a treasure trove beyond her wildest dreams... and the lavender-scaled dragon who collected it. Despite a rocky first meeting, Rarity and Greenfire soon find themselves drawn to each other more and more. But the question remains: How did a young dragon end up in the Everfree Forest all alone?

An alternate universe story that puts our favorite purple dragon and his beloved fashionista into a slightly different situation. Art used with permission from the wonderful ArtisteFish!

Now with a TV Tropes page! Thanks go out to Poptard and whoever else might feel like editing it.

Fan Works
Climbing the Cliff by Pia-chan (from chapter 5)
Such a Pleasant Chat by Fukaï
Some Form of Tea by Pia-chan (from chapter 4)
Promo Animation by CMagic (mild chapter 6 spoilers)

A Conversion Bureau Story

Whether it be clothed in a velvet glove, or by the iron hoof it covered, Princess Celestia forced ponification onto mankind, allowing no choice for the species. Only a scant hundred million escaped her law, out of a total of seven billion, whether it be by their own hand, the hoof of an unfortunate pony, or the three million who managed to escape to space in pods that would never make landfall even in the off-chance they would encounter a viable planet. She was confident that all of the apes that had ruined this planet of Earth were either surely dead, or her little ponies.

Millennia later, she would receive a strange visitor from the stars, one that held an agenda that she didn't agree with, but that she herself had given precedence for.

A journey to become great and powerful...

Trixie strives to reach this ultimate goal; but rather than simply proclaiming her skill, she will be forced to overcome many obstacles and adapt to her changing circumstances in order to ensure her success. She must face the new challenges set before her; but when adversaries emerge, enemies-turned-friends may be Trixie's only hope.

All of Equestria is united in celebration for the return of their beloved Princess Nightmare Moon. But when Celestia and everypony else recieve her she's skeletally starved, filthy, and very nearly dead. Meanwhile, while everypony's eye is turned, a lusty Blueblood pursues Twilight Sparkle, intent on adding her bloodline to his own so his family might step closer to godhood. (Alternate Universe, there never was a Princess Luna)

The star system Omega Centauri was just another oddity on a map to scientists in the not too distant future. However when they found the star was orbiting an earth-sized, earth-like planet instead of a black hole as its motion had suggested, a mission was scrambled to investigate this most unusual of celestial behaviors.

Hamstrung by politics, and nearly crippled before it began, the 'Lone Ranger' mission was reduced to just one crew member and left to his own devices.

These are the logs of Arrow 18 and its lone commander. This information is classified TOP SECRET by the Global Space Agency.

Do NOT tell the princess.

It occurred one peaceful night. Half of Equestria awoke to the sound like a double-shot thunderclap. A percussion heard in the skies and rattling windows from Apploosa, to Canterlot, to Ponyville. Nopony knew what it was or what it heralded for the world as it drew a line across the nation.

For Twilight Sparkle, this isolated incident might have faded from memory after a time, if not for the strange rumors of a creature sitting on the hill on the outskirts of town.

These are her thoughts given written form. These are Sparkle's Notes.

Report EVERYTHING to the Princess.