This story is a sequel to Metroid Equis

With the culmination of events on the BSL Research Station, Samus Aran is finally able to come back to Equestria, Planet Equis; to come back home. Much has changed in her absence, but it is still the friendly, peaceful, welcoming planet and nation that she left behind two and a half years prior. With the Space Pirate threat neutralized and the secret, illegal Metroid militarization programs destroyed, it appears that Samus can finally take another massive breather with her friends and enjoy some well-deserved rest, recovery, and relaxation. The galaxy is finally at peace.

At least... for a short while.

A new enemy, one much closer to home, soon rears its head, threatening all of Equestria and Equis with complete and utter annihilation. Their mission: revenge. Samus will fight with all of her being alongside her allies against an enemy who would like nothing more than to see all that she holds dear, including her home planet, completely razed. In so doing, her cunning, ever determined enemies unleash a weapon so unexpected, so eerily familiar yet horrifically foreign that even Samus herself just might prefer the late Ridley or the SA-X...

Editing Team: Random_Dragon; ToxiClay

The Metroid Timeline/Chronology (confirmed by Nintendo) can be found here.

Canon Considerations
MLP-FiM: Up to AND including "Magical Mystery Cure." (Seasons 1, 2, and 3)
Metroid Series: Everything up to AND including Metroid Fusion (Including original mangas. See official timeline above). So, effectively everything.

This story is a sequel to The Life and Times of a Winning Pony

Cloud Kicker's life has been going just about perfectly. She's got a good job, two beautiful girlfriends, and she's never been on better terms with her friends. She's even getting more time with her family now that her cousin is serving as Princess Twilight Sparkle's personal bodyguard. She made mistakes in her past, but now all of that is over and she's earned her happily ever after.

Or at least, that was what she thought. Little does she know that her new life is about to start getting very complicated.

An interlude between Flammenwerfer's fics Metroid: Equis and its sequel, Metroid Equis II: Duality.

The war is over. Equis has survived the dual threats of Phazon and Space Pirate invasion. A new era of peace and prosperity covers the planet, as new trade routes between Equis and the Federation - centered in the country of Equestria - bring new technology and wealth to the nation, and the world.

But these thoughts are far from Fluttershy's mind. Her thoughts are focused on her friends - especially Samus, far distant from the world - her daily life, and her animals.

In particular, a new one... One she's never seen before. But she calls Fluttershy Mama, so of course she'll care for the little flying jellyfish, whatever she is.

What could go wrong?

Edit: It isn't required to read Metroid: Equis to enjoy this story...but it's highly recommended to read it anyway. It's a really good story.

This story is a sequel to An Affliction of the Heart: Volume Four

With her newfound responsibilities as Queen, Kuno has seen fit to lead the changelings towards a life of coexistance with ponies.

But there are those who would wish to see such an endeavour fail, and they're not above taking action to make it fail.

Cover art commissioned by Iakovl, drawn by Derpah.

Side Story to The Demesne of the Reluctant Twilight Sparkle

When Doctor Princess Twilight Sparkle got Ponyville and the surrounding lands as her exclusive demesne, she knew it meant changes and stuff. Glittering opportunities. Dire crises. Friendships gained and imperiled. The dawn of a new age for Ponyville. A renaissance of the arts and sciences. A great test of her abilities as a leader and as a friend.

The brewing civil war took her by surprise, on the other claw.

The Princesses and their allies in Canterlot are working to change the laws, disband the new militias and ensure a lasting peace, but they need time. Soon, this cold war of arms and intimidation will heat up, and all the laws and decrees in the world ain't stopping it.

Doctor Princess Twilight Sparkle will buy them time. She will do what it takes to keep her friends, her family, and yes, her demesne safe.

With the help of a handsome griffon security professional—that's me, by the way—a devious illusionist, a ruthless athlete, a bored noble, and a pair of boater-clad con-ponies, she'll stop the damn war herself if she has to.

Touch wood I'll live to tell about it...

[Featured on EQD 21/4/2014] [Now on TVTropes]

When Luna gifts Twilight the town of Ponyville and its surrounding countryside as her demesne she's initially confused. Then, after double checking her dictionary, more than a little concerned.

All her friends are, legally, her possessions. The town that took her in is her plaything, if she so wishes. She has been given responsibility.

Can Twilight's vision for a modern renaissance outrun the harsh realities of the shadowy figures pulling strings behind the scenes, nobles jockeying for her attention, and an irritatingly metaphorical love triangle?

Special thanks to the insatiable Blue_Paladin42, the incorrigible Maskedferret, the intuitive Southpaw and the indestructible newbiedoodle for all their hard work, past, present and future.

Spike the dragon has a lot of free time on his claws these days, and has to fill that time with something, right? And where is he getting all these bits from?

Twilight finds out just what he's been doing, and she is not pleased.

Edited by the amazing Level Dasher.

Edit: Special Link, just for Rainbow Bob. No one else click it!

I still love ya, Bobby. Just know that.

This story is a sequel to An Affliction of the Heart Volume Three: Hybrid

Warden, the broken pegasus, his wife, Kuno the changeling, and their hybrid daughter, Swarm, continue their adventures in a wild, wacky world!

This story is a sequel to You Can Fight Fate

Time loops? The end of existence as we know it? Fate itself conspiring against you? Who has the energy to deal with that kind of thing?

Not Cloud Kicker, that's for sure. She's a mare who knows what she wants out of life. An easy job, a nice house, and an endless supply of potential banging partners. Then one day a simple little flower vendor moves in down the street and everything starts to change.

As a side story to the main Time Loop Trilogy, you can expect massive spoilers in the comments for both the original stories and unwritten chapters of this one.

The discovery of a tiny extraterrestrial object within our own solar system makes a strangely equine alien race aware that the Earth is inhabited by an intelligent species, and they're on their way to come visit.

But since space is a really, really, really big place, they aren't going to get here for about a thousand years. They do have FTL communication, though, so while we wait maybe we'd like to be pen pals...

You could win a free one shot commission! Check the associated blog post for details.