Before the creation of the elements of Harmony, Equestria's protection lay in the hooves of a group of ponies that could manipulate the forces of magic that made up their world. This group was called the Harmony Order.

The once peaceful lands of Equestria are now gripped in a horrible civil war, sun vs moon, light vs darkness, sister vs sister. Forced to choose sides, the Order decides to align themselves with Princess Celestia. However unbeknownst to all sides of the war, a sinister plot was slowly being carried out.

After her parents abuse becomes too much she ends up snapping before slaughtering her parents, she is sent to Foalsome Youth Detention Centre. Foalsome Youth Detention Centre is considered to be the toughest and most secure juvenile prison in Equestria. Scootaloo's life instantly changes as she grows to adapt to life behind bars.

Stormy Cloud lived in Ponyville with his parents. On the surface they seemed like a happy family but behind closed doors was a dark secret.

Ten years ago Scootaloo’s mind has been corrupted by an evil demon that has the ability to turn any creature evil. The Elements of Harmony faced with no choice was forced to do the unthinkable. They had to banish Scootaloo to an eternity of stone.

When the Cloudsdale stock market crashes, the entire Pegasus race is left in a depression. To make matters worse the Canterlot government has refused to send any form of financial aid because of this several radical pegasi would form together to create the Pesagus Liberation Army. A paramilitary group that vows to have the entire pegasi race under one banner and fully independent from Equestria through any means necessary.

On one fateful day Prince Solar Storm is framed for a crime he didn't commit. Banished from his home with nopony but a small group of supporters, he eventually finds himself on a large unclaimed island. He however soon forms the Solar Kingdom from which he proclaims himself King.

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The prologue starts a couple years before the mane 6 is born.