The following transcripts are of a journal found in Ponyville on April 16th of this year. The last recorded contact with the town had been 3 days prior, on the 13th, when a team under orders from Princess Celestia was sent to look into several missing pony reports in the area. When another group of investigators were sent on the 16th, the town was found deserted. The journal’s owner is believed to be the princess’s personal student, Twilight Sparkle. None of the town’s inhabitants have been located in the weeks since.

Readings:
Nimbus Productions
Scribbler Productions

I highly recommend both of them.

A print version of all the stories in this series can be found here. (There is currently a printing error I am working to correct. This will be available again soon.)

This story is a sequel to A FLEet|ng LIght |n thE DArknEsS

Case Report: Summary of Events
Submitted by: Verdant Vines
Location: Ponyville
Date(s): April 16th to April 23rd
Case: Ponyville Mass Disappearance (#3467)
Classification: Top Secret

To whom it may concern,

What follows is an update on the status of the investigation into the disappearance of the entire citizenship of Ponyville.

Readings:
Nimbus Productions - First Chapter
Scribbler Productions - Full Story

I highly recommend both of them.

A print version of all the stories in this series can be found here. (There is currently a printing error I am working to correct. This will be available again soon.)

Not quite a mare, but unhappy being a colt. It's a hard position for a young pony to be in. Would be easier if judgement weren't in every look, hate in every scowl. For Glitter Shell, even her friends and family aren't giving her the support she needs. So, she goes to find some in her personal hero.

Based on the blog Ask Glitter Shell. Give it a chance; I doubt you'll regret it.

Featured on Equestria Daily on August 12th, 2013; thank all of you for the support! Though please remember to support trans people in real life. This story is a very tame snapshot of what they have to go through for most of their lives.

Spoilers in comments!

Rarity wasn't so sure of her life walking into this little night club on the East Side of Canterlot. But one stallion changes her unstable composure into one of pure desperation. Will she do anything, to achieve that long sought after dream of being the most respected and known designer in this bustling city?

This started off as a quick "one-shot" story one night while I was drinking some Fat Tire.
Now featured on Equestriadaily.com on 03/29/2013
Reviewed by The Equestrian Critics Society. Score: 10/10?

Me is the best friend I could ever hope to have. Me is always there in the pond waiting for I. I love me.

When Twilight Sparkle slipped beneath the covers last night, everything had been fine. She had friends whom she loved, a teacher she adored, and a bright future ahead of her. But when she woke up, her blankets and quilts had been replaced by hospital gowns and padded restraints.

Everything is wrong and nothing makes sense; even her friends have changed. The doctors keep telling her that she is sick, that none of it was real and that it was all in her head. Yet she remembers a life far beyond the hospital walls. She couldn't have made it all up on her own. They must be lying… right?

Ask Asylum Twilight - Still updating regularly!
Equestria Daily
TVTropes
Asylum Fan Group
The Tartarus Project
Russian Translation
The Asylum 20,000 View Spectacular Stage Show!

Art:
Asylum Cover by conicer
Twilight and Twilight Smiles by dreamingnoctis
Mirror Twilight and Plague Doctor by Jaestring / BloodGoldWings
Twilight Smiles and Doctor AJ by conicer
Nurse Ratchet and Silas and What's in the mirror? by Archonix
Doctor AJ Sketch by Archonix | Colored and vectored version by ReFro82
Twilight's Asylum by Khan the Cake Lover
Smilight by HappySwitch
Twilight Waking Up by Dombrus
Fan Art by toxicdemon10
Asylum Twilight by Madness-With-Reason
Asylum Fluttershy and Asylum Ch 26 by Downburst-Backspace
Twilight and her Twin by v747
Birdgirl by sirValter

Readings and Videos:
Asylum Animated Trailer Video by formuladash
Reading by Gammarobot (SugarCubeRadio): All Chapters Here
Reading by Ender Brony: All Chapters Here
Reading by VisualPony: All Chapters Here
Reading by MelancholyIguana: All Chapters Here
Fan Trailer by Kaidan: Asylum FanFic Trailer Cuckoo's Nest

Sanctuary by Kaidan
Broadhoof Files: Dr. Humors by TypewriterError
Broadhoof Files: Corporal Phalanx Spear (Ret.) by Phalanx Spear
A Hearth's Warming Tragedy by Seven Fates

A special thanks to Breath of Plagues, Rex Ivan,
ChudoJogurt, Cynewulf, Death the Kid, Selbi, PrinceDolph, Blahman2816, Queue, and Gage!

Axan Zenith - Dr. Dreamer
Dratini4 - Way Finder
psychicscubadiver - Bright Mind
Velkaden - Dream Chaser
Reese - Silver Glow
Viola Heartstrings - Clover
Archonix - Spinney Whiteacre

Rarity has gone to sleep, and the Cutie Mark Crusaders find themselves extremely bored. What could they possibly do? Play a slumber party game, of course! An innocent game of truth or dare turns into something not-so-innocent when Apple Bloom gives Scootaloo an interesting challenge... Soon the three fillies find themselves learning a whole lot about one another, themselves, and certain taboo parts of life.

[WARNING!] Borderline mature!

Co-op with Criticul

Twilight is beyond the title protege. Prodigies are merely brilliant. Twilight has surpassed most of the greatest mages in history before the age of thirty. Twilight's research has changed the landscape itself. She is a living legend who some whisper may be the greatest user of magic to ever exist... perhaps even an equal one day to the semi-divine princesses.

But Twilight's knowledge is not infinite. She has one final lesson to learn. Twilight must learn the Final Law of Magic.

Shining Armor and Cadence's spell reveals something completely unexpected as it expels Chrysalis and her changelings out of Canterlot: A secret kept from everypony for several years...

Now with a TV Tropes page! Warning: Will Contain spoilers.

Even the toughest of us have emotions. When a certain cyan daredevil is feeling under the weather, Twilight ventures to help Rainbow out of her rut, and possibly gain more than she had hoped for.