The Princess said that the inhabitants of the other realm wouldn't stand a chance against Sunset. They obviously didn't know about the SCP Foundation.

Major Motoko Kusanagi along with her ally Batou and a Tachikoma had just saved the world from certain destruction, however they gave it there all to do it, and went out as hero's

however that wasn't the end of the story, now the pare are stranded in a strange new world with new colourful bodies, can they find there place in this odd world ruled by magic, or will there technological difference make them outcasts here, only time will tell

this is a MLP / Ghost in the Shell Crossover, don't take it too seriously

Starswirl the Bearded was renowned for many of his spells that unicorns use today. That being said, even a great unicorn like him had plenty of unfinished work, the spell which Celestia passed to Twilight is one of those.

Unknown to Equestria as a whole, their entire lives would soon be changing for better or worse when an entire space fleet appears in response to Twilight's magic spell.

In the grim darkness of the far future, cyborg supersoldier Alita is locked in battle with the mad scientist Desty Nova amongst the shattered ruins of Earth. Fighting in dreams as well as reality, the two yearn to transcend the world of suffering and carnage that has forged them. In Equestria, Twilight Sparkle is hard at work developing a new teleportation spell, and subconsciously latches on to their desire. Their starkly different worlds soon collide.

A Battle Angel Alita crossover.

Genesect. a Pokemon desinged in the same veins as Mewtwo, yet, inexplicitly more awsome.

And I've become one.

All because I bought some floppy dissk that looked like one of its Drives off this man named the Merchent, and tryed to run it on my computer.

This story is a sequel to Elementals of Harmony

Ditzy Doo returns home one day to find an old friend waiting for her with dire news and a brain in a jar. With the latter, she will witness the answer to a pair of ominous questions: What if Jin-Gitaxias was a brony? What if New Phyrexia tried to invade Equestria?

As noted above, this is a sequel. Read the first story first, or little if anything will make sense. A certain level of gore and body horror will inevitably arise, given the nature of Phyrexia (For the card game illiterate: Like the Borg, but with more magic and much less attachment to the humanoid form.)

Cancelled after a long remission. You can see what would have been here.

The Cutie Mark Crusaders and their friends have a mystery on their hooves, and the only clue is a Unicorn mare whose kindness, gentleness and charm seem almost too good to be true. If they can’t discover the truth, all of Ponyville may be in danger.

This story takes place after the My Little Pony Movie, and before the start of Season Eight.

Gregory was not having a good life after he escaped the Pizzaplex, Freddy was dismantled after he saved the boy by pushing himself and Vanny off the rooftop, Gregory finding out that the Security Guard working there is the same one responsible for the kids disappearances, and now he’s on the run, all alone, no family and no one to turn to… until fate strung him up.

When Twilight Sparkle uses a spell from the Chamber of Creation, she accidentally summoned Gregory into her world. With no way for him to go home and no family to even go to, Twilight Sparkle must have to now help Gregory, now Glamrock Superstar, to adjust his life in Equestria.

Stories inspired this fanfic:

Courage of Corona by VirusChris
https://www.fimfiction.net/story/75650/my-little-pony-courage-of-corona

A Giant Adventure to Equestria by ThePinkedWonder
https://www.fimfiction.net/story/427481/a-huge-adventure-in-equestria

Twilight’s Little Comet by GoebelTron
https://www.fimfiction.net/story/502112/twilights-little-comet

MLP/Skullgirls Crossover. Contains Skullgirls Spoilers.

A weapon lands in Ponyville. A living weapon. Bound and changed, she fought her world's gravest threat. Now she's free, for all the good it did her.
She is called Painwheel: a raging monster with the heart of a little girl. Will she find peace? Or more tragedy?

Ladies and Gentlemen(?), it's Showtime!

Twilight awoke one day to a normal coffee break with her daily errands. Until she ran into a small colt...
A weird colt, claiming that he`s dead. And he sure looked it, too.

What will Twilight do with the poor depressed thing? Why does the foal seem so concealed on his past?