This story is a sequel to Twilight Sparkle Exports Herself Repeatedly

After a drastic and ill-advised attempt to quash news stories regarding her previously non-existent love life, Twilight Sparkle has inadvertently given practically everypony she knows the wrong idea about herself. Or is it the right idea? She really doesn't know.

Which is starting to become a very serious problem.

The writer has no idea what he's doing at this point.

It has been ten years since the defeat of the Changling Queen, and Equestria is again at peace. Twilight Sparkle and the Elements of Harmony have reached their prime, and have begun to settle down. Love and life abound in Ponyville, especially for Twilight's friends, but she has nopony to call her own.

There is a reason.

A series of events lead to a horrible revelation, and Twilight is thrust deep into a terrifying web of secrets and lies. Her peace is over.

This time, however, she won't be fighting monsters or madponies. What she faces will be much, much worse.

Act One of Two.

Act Two is here.

Currently undergoing editing by the wonderful Mstar!

In a remote corner of the Solana Galaxy lies a backwater planet called Veldin. Nothing important ever happens there. Nothing exciting, either. Ratchet, a Lombax with no idea of his origins, is beginning to grow bored with his life, and dreams of excitement. He wishes on a falling star for some excitement to find its way into his life.

The falling star answers by crashing into his home in the form of a basket carrying a tiny creature with a horn, a pair of wings, and four hooves. The name on the basket reads "Twilight Sparkle".
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Part of the PWNY-verse.

Edit: Now with cover art by the amazing G_Haze
Video Consultant/Technician: m2pt5 (he provides the infobot videos and similar.)

Edit: Game Timeline
Ratchet and Clank: Done
Going Commando: Done
Up Your Arsenal: Done
Deadlocked: Done.
Size Matters: Done.
Tools of Destruction: Done.
Quest for Booty: Done.
Crack in Time: Done.
All 4 One: Done.
Into the Nexus: Done.

Twilight Sparkle broke time when she got her cutie mark. Now Twilight and Sparkle are sisters from another time. Twilight is hailed as the potentially greatest light magician of all time, and already has a reputation as a hero by the time she goes to Ponyville. This isn't her story, not primarily.

Sparkle is an orphan - her dark magic killed her parents. She lives with her brother in Canterlot's industrial sector because they can't afford anything better. She can't leave either. She's a natural dark mage; while Sparkle won't go mad like Sombra, her reputation is hardly any better. Worse, the law doesn't see her as a good pony.

The fact that the dead don't stay dead around her, or that Thorn - Spike's double - is an undead, soul-eating abomination, are other matters altogether.

(Also has some Slice-of-Life, but fimfiction tags won't let me put it with Adventure.)

Has an ask blog to go with it: Ask Sparkle and Thorn.
Also has a TvTropes page: Split Second Tropes.

Featured on EQD.

Cover art by Swirling Line.

Lapis-Lazuli proudly presents....

Once, long ago, the four nations of ponykind were wracked by an endless war that nearly destroyed themselves and the world they lived in. Today, united by the power of the Avatars - Special ponies imbued with the power and magic of all four great tribes - they live together in harmony as the Nations of Equestria.

But with war and chaos looming on the horizon, the light of hope remains. For the strange spell that first wove the power of the Avatars into existence has chosen another to protect the peace and prosperity of Equestria. A young Unicornian heiress by the name of Twilight Sparkle, who is about to embark on the adventure of a lifetime.

Cover Art by Ambris